Structure of PDB 6ijm Chain A

Receptor sequence
>6ijmA (length=337) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
HMEWIQSLPKIELHAHLNGSIRDSTLLELARVLGEKGVIVFADVEHVIQR
SLVEVFKLFDLIHKLTTDHKTVTRITREVVEDFALENVVYLELRTTPKRS
DSIGMSKRSYMEAVIQGLRSVSEVDIDFVTRKKIYVRLLLSIDRRETTES
AMETVKLALEMRDVGVVGIDLSGNPLVGEWSTFLPALQYAKDNDLHITLH
CGEVPNPKEIQAMLDFKPHRIGHACFFKDEDWTKLKSFRIPVEICLTSNI
VTKSISSIDIHHFADLYNAKHPLILCTDDFGVFSTSLSNEYALAVRSLGL
SKSETFALARAAIDATFAEDEVKQQLRFIFDSASPEH
3D structure
PDB6ijm Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase.
ChainA
Resolution2.016 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.5.4.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H13 H15 H217 D295 H14 H16 H200 D278
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0019239 deaminase activity
GO:0046872 metal ion binding
GO:0062154 N6-methyl-AMP deaminase activity
Biological Process
GO:0006401 RNA catabolic process
GO:0009117 nucleotide metabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ijm, PDBe:6ijm, PDBj:6ijm
PDBsum6ijm
PubMed30721978
UniProtQ8LPL7|ADAL_ARATH N6-mAMP deaminase (Gene Name=MAPDA)

[Back to BioLiP]