Structure of PDB 6hf4 Chain A

Receptor sequence

>6hf4A (length=325) Species: 411476 (Bacteroides ovatus ATCC 8483)

DNSLIKKELCTEGASVEAKKVYTYLRNCWGRKTLSSTMANVTWNVNEAIW
VNRQTGKYPAIACFDYMNLPASPADWIDYNKISVVEDWWNAGGLVAACWH
WNVPVTENSSEYKCMISETDFDITKALQEGTRENEIIKADLEELAGYLLL
LKQKNIPVIWRPLHEAAGKWFWWGKDAASYKRLWKLVYETFKQKGLNNLI
WVWTSETNDRDWYPGDAYVDIIGRDVYHKTSAAGLATDFDALKKAFPDKL
IALSECGDVATIDKQLAAGAQWAWFMTWYDYEVTKDTTAPVFNSGQHEHA
DKAWWNNAFGQPGVICRSDLPSFKL

3D structure

• PDB: 6hf4 A surface-exposed GH26 beta-mannanase fromBacteroides ovatus: Structure, role, and phylogenetic analysis ofBoMan26B.
• Chain: A
• Resolution: 1.781 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	BMA	A	W314 Y315	W278 Y279
BS02	GLA	A	Y148 K149	Y112 K113
BS03	CA	A	L105 P106 S108 E179	L69 P70 S72 E143

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 29 02:32:40 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6hf4', asym_id = 'A', title = 'A surface-exposed GH26 beta-mannanase fromBacter...ture, role, and phylogenetic analysis ofBoMan26B.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6hf4', asym_id='A', title='A surface-exposed GH26 beta-mannanase fromBacter...ture, role, and phylogenetic analysis ofBoMan26B.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004553,0006080,0016985', uniprot = '', pdbid = '6hf4', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0006080,0016985', uniprot='', pdbid='6hf4', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>