Structure of PDB 6f2p Chain A

Receptor sequence
>6f2pA (length=1040) Species: 44249 (Paenibacillus) [Search protein sequence]
PRADEFDTLREKYKAMLNGGTTYNLSDPDIAARVNAITVTAQGYWDSMLK
DPNRNRLWNDAPFGSDSTSITTTYRHLYDMALAYTTYGSSLQGNAALKAD
IISGLDWMNANQFYNGCSQYQNWWHWQIGGPMALNDIVALMYTELTATQI
SNYMAAIYYTQASVTMTGANRLWESQVIAISGILNKDSARVAAGRDGISA
LLPYVAKGDGFYNDGSFVQHTYYAYNGGYGSELLSGIADLIFILNGSSWQ
VTDPNKNNVYRWIYDSYEPFIYKGNLMDMVRGREISRHGLQDDKAAVTVM
ASIIRLSQTAASADATAFKRMVKYWLLLDTDKTFLKAVSIDLIIAANQLV
NDSTVTSRGELVKYKQFSGMDRAVQLRPGFGFGLSMFSSRIGNYESINAE
NNKGWHTGDGMTYLYNTDLSQFNDHFWATVDNYRLPGTTVLQNTTQTANS
RSDKSWAGGTDILGQYGVSGMELHTVGKSLTAKKSWFMFDDEIVALGSGI
ASTDGIATETIVENRKLNSSGNNALIVNGTAKPGSLGWSETMTGTNYIHL
AGSVPGSDIGYYFPGGAAVKGLREARSGSWSSLNSSASWKDSTLHTRNFM
TLWFDHGMNPTNGSYSYVLLPNKTSSAVASYAATPQISILENSSSAQAVK
ETQLNVTGINFWNDEPTTVGLVTSNRKASVMTKETASDFEISVSDPTQSN
VGTIYIDVNKSATGLISKDNEITVIQYYPTMKFKVNVNNSGGKSYKVKFS
LTGTPGSNPSPIPIPNPYEAEALPINALTDTPVVYNDANASGGKKLGFNN
NAVDDYVEFSLDVTQPGTYDVKSRIMKSTNSGIYQLSINGTNVGSAQDMF
WTTSELSKEFTMGSYSFTSPGSYLFRLKTTGKNVSSSGYKLMLDNFSLVS
TGIDTTVIVDNADAAGVTKVGTWTGTNTQTDRYGADYIHDGNTGKGTKSV
TFTPNVPISGTYQVYMMWAAHTNRATNVPVDVTHSGGTATLNVNQQGNGG
VWNLLGTYSFNAGSTGAIKIRTDATNGYVVADAVKLVKVP
3D structure
PDB6f2p Structure and Dynamics of a Promiscuous Xanthan Lyase from Paenibacillus nanensis and the Design of Variants with Increased Stability and Activity.
ChainA
Resolution2.6 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) N170 H220 Y229 R283 E395
Catalytic site (residue number reindexed from 1) N170 H220 Y229 R283 E395
Enzyme Commision number 4.2.2.12: xanthan lyase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D490 D491 E492 Q636 E651 D490 D491 E492 Q636 E651
BS02 CA A E769 E771 S791 K794 D894 E769 E771 S791 K794 D894
BS03 CA A D780 N801 D805 D780 N801 D805
BS04 CA A D329 D331 T333 D329 D331 T333
BS05 CA A Q161 S163 E174 Q161 S163 E174
BS06 CA A D910 N911 Y933 D936 D1032 D910 N911 Y933 D936 D1032
BS07 CA A G946 D1023 G946 D1023
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016829 lyase activity
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
GO:0047492 xanthan lyase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009056 catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6f2p, PDBe:6f2p, PDBj:6f2p
PDBsum6f2p
PubMed30503284
UniProtA0A493R6T1

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