Structure of PDB 6exf Chain A

Receptor sequence
>6exfA (length=343) Species: 239 (Flavobacterium sp.) [Search protein sequence]
LEIPTSPLIIKITQQERNILSNVGNLLVKAFGNYENPDYIASLHLHAFQL
LPERITRILSQFGSDFSAEQYGAIVFQGLIEVDQDDLGPTPPNWQGADYG
KLNKYGFICSLLHGAVPSKPVQYYAQRKGGGLLHAVIPDEKMAATQTGSG
SKTDLFVHTEDAFLSNQADFLSFLYLRNEERVPSTLYSIRSHGKMNPVMK
KLFEPIYQCPKDSGPTASVLYGNRELPFIRFDAAEQIFNENAGQTSEALG
NLMDFWDEAKTLINSDYIPNSGDLIFVNNHLCAHGRSAFIAGQRIENGEI
IKCERRQMLRMMSKTSLIHIRSVTRTDDPYFIMEEHLGKIFDL
3D structure
PDB6exf Structural Studies based on two Lysine Dioxygenases with Distinct Regioselectivity Brings Insights Into Enzyme Specificity within the Clavaminate Synthase-Like Family.
ChainA
Resolution1.95 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.14.11.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE A H176 E178 H312 H158 E160 H284
BS02 LYS A V154 G166 Y193 S202 G313 R314 R334 M336 V136 G148 Y175 S184 G285 R286 R306 M308
BS03 LYS A Q144 R145 G166 R338 Q126 R127 G148 R310
Gene Ontology
Molecular Function
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity

View graph for
Molecular Function
External links
PDB RCSB:6exf, PDBe:6exf, PDBj:6exf
PDBsum6exf
PubMed30410048
UniProtJ3BZS6|LYS4O_FLASC L-lysine 4-hydroxylase (Gene Name=PMI10_03368)

[Back to BioLiP]