Structure of PDB 6epy Chain A

Receptor sequence
>6epyA (length=669) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
AFETTTPPEPPQFPAEGKINYVARDTILEFKALPSYSEPDWITEKFEKAG
KLPPLKERLPEEPLVYKTGNMPDGVGVYGDTMRHVVGGRPEGWNYIAGQS
QGWGGIDIALSECLTRTAPLFQVDAKDTEPLPNLAKSWEWSEDGHTLTMH
LVKGAKWSDGEAFNADDVMFYWEDAVVDPNVSPLGGGASPEAFGEGTTLK
KIDDYTVEWTFKAAFPKQYLYTMAYPSFCPGPSHILKPQHPKYSKNTYNQ
FKNAFPPEYMNMPVMGAWVPVSYRPDDLIVLRRNPYYWKVDEKGQQLPYL
NEVHYKLSTWADRDVQAVAGSGDFSNLEQPENFVASLKRAADPNAPARLA
FGPRLIGYNLQMNFSANGWGNPDERGQAIRELNRNEVFRQAVTSALDRKA
IGDSLVKGPFTAIYPGGISSGTSFYDRASTVYYPFNLEGAKAALASIGLK
DTDGDGFLNFPKETLGGRNVEITLLVNNGYATDKSLAEGLVGQMAKLGLR
VVIHSLDSNQRDAAHYGGQFDWLVRRNSTELSSVVQNTEQLAPVGPRTSW
NHRSPEGKELDLMPFEKEMADIVRKFISSQDNAERADLMKQYQKVYTQNL
YTIGLTEYPGALIVNKRFSNVPQGTPIFMFNWAEDAIIRERLWVAADKQG
KYELFPQQLPGKPGEGGPI
3D structure
PDB6epy The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
ChainA
Resolution2.04 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FRU A R533 W639 R526 W632
BS02 GLC A W110 N484 Y487 S515 D519 W103 N477 Y480 S508 D512
BS03 GLA A G111 W317 R320 N333 E335 Y487 R533 W639 E641 G104 W310 R313 N326 E328 Y480 R526 W632 E634
BS04 CA A A182 V183 D185 V188 A175 V176 D178 V181
BS05 CA A D458 D460 D462 F464 N466 N476 D451 D453 D455 F457 N459 N469
BS06 CA A W179 T205 L206 W172 T198 L199
BS07 CA A T418 A419 I420 T411 A412 I413
BS08 CA A P248 S251 P241 S244
BS09 CA A W48 N308 W41 N301
BS10 CA A Y266 M267 G671 E672 Y259 M260 G664 E665
BS11 CA A D47 W48 D40 W41
BS12 CA A Y280 P282 D283 Y273 P275 D276
BS13 CA A Y255 N256 K259 Y248 N249 K252
BS14 CA A S148 E149 D150 S141 E142 D143
BS15 CA A T254 Y255 N256 T247 Y248 N249
BS16 CA A P337 E338 T489 P330 E331 T482
BS17 CA A E566 L567 E559 L560
BS18 CA A T254 Y255 T247 Y248
BS19 CA A Y432 D433 R434 Y425 D426 R427
BS20 CA A K574 R581 K567 R574
BS21 CA A K414 G415 K407 G408
BS22 CA A N392 E393 N385 E386
BS23 CA A F625 S626 F618 S619
BS24 CA A P15 P17 A419 I420 P8 P10 A412 I413
BS25 CA A A30 R31 A23 R24
BS26 CA A P79 P629 Q630 P72 P622 Q623
BS27 CA A Q106 N260 F262 P263 Q99 N253 F255 P256
BS28 CA A D174 F177 Y178 P237 G238 D167 F170 Y171 P230 G231
BS29 CA A K133 N589 R592 K126 N582 R585
BS30 CA A E68 K160 G161 E61 K153 G154
BS31 CA A G81 V82 G74 V75
BS32 CA A D87 T88 G657 K658 Y659 E660 D80 T81 G650 K651 Y652 E653
BS33 CA A R90 Y659 R83 Y652
BS34 CA A G111 R320 F331 E641 G104 R313 F324 E634
BS35 CA A L362 I363 G364 N534 F635 L355 I356 G357 N527 F628
BS36 CA A G455 K457 N466 F467 P468 G448 K450 N459 F460 P461
BS37 CA A P282 D284 P275 D277
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