Structure of PDB 6e48 Chain A

Receptor sequence
>6e48A (length=304) Species: 223997 (Murine norovirus 1) [Search protein sequence]
MVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGT
TPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGY
PDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASV
TAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEV
LLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYR
NTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLA
SVGS
3D structure
PDB6e48 Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor.
ChainA
Resolution1.801 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 4OA A Y250 Y435 Y22 Y207
BS02 CA A Q438 D440 Q210 D212
BS03 CA A D366 D410 D138 D182
BS04 CA A N364 D366 N136 D138
External links
PDB RCSB:6e48, PDBe:6e48, PDBj:6e48
PDBsum6e48
PubMed30194229
UniProtQ80J94|CAPSD_MNV1 Capsid protein VP1 (Gene Name=ORF2)

[Back to BioLiP]