Structure of PDB 6dqe Chain A

Receptor sequence
>6dqeA (length=294) Species: 9606 (Homo sapiens) [Search protein sequence]
AEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPP
FACEVKSFRFTPRVQRLNELEAMREYTLQSFGEMADNFKSDYFNMPVHMV
PTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEE
EEYALSGWNLNNMPVLEQSVLAKVPWLYVGMCFSSFCWHIEDHWSYSINY
LHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNV
LMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCT
3D structure
PDB6dqe Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
ChainA
Resolution1.689 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) Y472 H483 E485 H571 A583
Catalytic site (residue number reindexed from 1) Y178 H189 E191 H277 A289
Enzyme Commision number 1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 H6A A Y409 D412 W470 Y472 F480 H483 E485 K501 W503 L536 H571 Y124 D127 W176 Y178 F186 H189 E191 K207 W209 L242 H277
BS02 MN A H483 E485 H571 H189 E191 H277
External links
PDB RCSB:6dqe, PDBe:6dqe, PDBj:6dqe
PDBsum6dqe
PubMed
UniProtP29375|KDM5A_HUMAN Lysine-specific demethylase 5A (Gene Name=KDM5A)

[Back to BioLiP]