Structure of PDB 6dq8 Chain A

Receptor sequence
>6dq8A (length=302) Species: 9606 (Homo sapiens) [Search protein sequence]
AEFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPP
FACEVKSFRFTPRVQRLNELEAMTAFGFEQAVREYTLQSFGEMADNFKSD
YFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKD
GRRKILPEEEEYALSGWNLNNMPVLEQSVLKVPWLYVGMCFSSFCWHIED
HWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQL
VTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNF
CT
3D structure
PDB6dq8 Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.
ChainA
Resolution1.46 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) Y472 H483 E485 H571 A583
Catalytic site (residue number reindexed from 1) Y186 H197 E199 H285 A297
Enzyme Commision number 1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 H6S A Y409 A411 W470 Y472 F480 C481 H483 K501 W503 H571 Y133 A135 W184 Y186 F194 C195 H197 K215 W217 H285 MOAD: Kd=0.26uM
PDBbind-CN: -logKd/Ki=6.59,Kd=0.26uM
BindingDB: Kd=260nM,IC50=320nM
BS02 H6T A R73 Y409 Y472 F480 H483 K501 W503 H571 R63 Y133 Y186 F194 H197 K215 W217 H285 MOAD: Kd=0.26uM
BS03 MN A H483 E485 H571 H197 E199 H285
External links
PDB RCSB:6dq8, PDBe:6dq8, PDBj:6dq8
PDBsum6dq8
PubMed30392349
UniProtP29375|KDM5A_HUMAN Lysine-specific demethylase 5A (Gene Name=KDM5A)

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