Structure of PDB 6dns Chain A

Receptor sequence
>6dnsA (length=590) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence]
PDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTVDY
VQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDDPL
LSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDTNT
EAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSADN
VMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREGNP
FTSATLFDDYTFGHPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFRDD
TRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGITW
GTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYTIL
PAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATGTW
TLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDGTP
VWFSNPMVLAKATALDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLVLTQ
NSDDTWRLSGMPTAADAGENSFTFNVSDILSSDTEIKITV
3D structure
PDB6dns Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
ChainA
Resolution2.24 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A F327 R328 D330 R332 D336 F297 R298 D300 R302 D306
BS02 CA A T77 D79 T47 D49
BS03 CA A G419 D451 E453 D502 D504 G389 D421 E423 D472 D474
BS04 CA A G528 D560 E562 D564 D609 G498 D529 E531 D533 D578
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:6dns, PDBe:6dns, PDBj:6dns
PDBsum6dns
PubMed30282808
UniProtQ08I46

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