Structure of PDB 6dms Chain A

Receptor sequence
>6dmsA (length=703) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence]
VPDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTVD
YVQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDDP
LLSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDTN
TEAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSAD
NVMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREGN
PFTSATLFDDYTFGQPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFRD
DTRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGIT
WGTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYTI
LPAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATGT
WTLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDGT
PVWFSNPMVLAKATALKDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLVL
TQNSDDTWRLSGMPTAADAGENSFTFNVSDGILSSDTEIKITVDHVAGFT
NLGNGAPVWSSPILNLTDGKGSFAYNYTLQLGTDYYDFEGDALTITKTSG
PDWLTIQQTDANSWKLSGTPINSDAGENSFTFNLSDDTNSTTAEILINVI
ATI
3D structure
PDB6dms Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
ChainA
Resolution2.85 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A F327 D330 R332 N335 D336 F298 D301 R303 N306 D307
BS02 CA A G528 D560 E562 D564 D609 G499 D531 E533 D535 D580
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:6dms, PDBe:6dms, PDBj:6dms
PDBsum6dms
PubMed30282808
UniProtQ08I46

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