Structure of PDB 6dlh Chain A

Receptor sequence
>6dlhA (length=704) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence]
QVPDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTV
DYVQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDD
PLLSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDT
NTEAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSA
DNVMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREG
NPFTSATLFDDYTFGHPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFR
DDTRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGI
TWGTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYT
ILPAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATG
TWTLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDG
TPVWFSNPMVLAKATALKDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLV
LTQNSDDTWRLSGMPTAADAGENSFTFNVSDGILSSDTEIKITVDHVAGF
TNLGNGAPVWSSPILNLTDGKGSFAYNYTLQLGTDYYDFEGDALTITKTS
GPDWLTIQQTDANSWKLSGTPINSDAGENSFTFNLSDDTNSTTAEILINV
IATI
3D structure
PDB6dlh Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
ChainA
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A F327 D330 R332 N335 D336 F299 D302 R304 N307 D308
BS02 CA A G634 D666 E668 D670 D715 G606 D638 E640 D642 D687
BS03 CA A G528 D560 E562 D564 D609 G500 D532 E534 D536 D581
BS04 CA A T77 D79 T49 D51
BS05 CA A G419 D451 E453 D502 G391 D423 E425 D474
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6dlh, PDBe:6dlh, PDBj:6dlh
PDBsum6dlh
PubMed30282808
UniProtQ08I46

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