Structure of PDB 6djv Chain A

Receptor sequence
>6djvA (length=610) Species: 1773 (Mycobacterium tuberculosis) [Search protein sequence]
QALQKYSTDLTARAREGKLDPVIGRDNEIRRVVQVLSRRTKNNPVLIGEP
GVGKTAIVEGLAQRIVAGDVPESLRDKTIVALDLGSMVAGSKYRGEFEER
LKAVLDDIKNSAGQIITFIDELHTIVGAGAAGNMIKPMLARGELRLVGAT
TLDEYRKHIEKDAALERRFQQVYVGEPSVEDTIGILRGLKDRYEVHHGVR
ITDSALVAAATLSDRYITARFLPDKAIDLVDEAASRLRMEIDSRPVEIDE
VERLVRRLEIEEMALSLAKLRSELADQKEKLAELTTRWQNEKNAKEEVGP
DDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDA
VRRSRAGVSDPNRPTGAFMFLGPTGVGKTELAKALADFLFDDERAMVRID
MSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRRPYTVVLFDEIEKAH
PDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGSGGSAEQVLAAV
RATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQV
SLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVP
VNVSPDADSL
3D structure
PDB6djv ATP hydrolysis-coupled peptide translocation mechanism ofMycobacterium tuberculosisClpB.
ChainA
Resolution3.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A K250 R252 Y655 V656 K92 R94 Y420 V421
BS02 AGS A I573 T609 G610 V611 G612 K613 T614 N721 R808 I338 T374 G375 V376 G377 K378 T379 N486 R573
BS03 AGS A V180 G211 K212 T213 V22 G53 K54 T55
BS04 AGS A R332 R333 R167 R168
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0009408 response to heat
GO:0034605 cellular response to heat
GO:0042026 protein refolding
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009274 peptidoglycan-based cell wall

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6djv, PDBe:6djv, PDBj:6djv
PDBsum6djv
PubMed30257943
UniProtP9WPD1|CLPB_MYCTU Chaperone protein ClpB (Gene Name=clpB)

[Back to BioLiP]