Structure of PDB 6d3r Chain A

Receptor sequence
>6d3rA (length=1127) Species: 9031 (Gallus gallus) [Search protein sequence]
SADSADNLSEKLEREWDRELATSKKKPKLINALRRCFFWKFMFYGILLYL
GEVTKSVQPLLLGRIIASYDPDNSSERSIAYYLGIGLCLLFLVRTLLIHP
SIFGLHHIGMQIRIALFSLIYKKTLKLSSKVLDKISTGQLVSLLSNNLNK
FDEGLALAHFVWIAPLQVALLMGLLWDMLQASAFAGLAFLIVMAFFQAWL
GQMMMKYRDKRAGKINERLVITSEIIENIQSVKAYCWEDAMEKMIESLRE
TELKLTRKAAYVRYFNSSAFFFSGFFVVFLAVVPYAVTKGIILRKIFTTI
SFCIVLRMTVTRQFPGSVQTWYDSIGAINKIQDFLLKEEYKALEYNLTTT
GVEVDKVTAFWDEHASPVLQDINFKIEKGELLAVSGSTGSGKTSLLMLIM
GELEPSEGKIKHSGRISFSPQVSWIMPGTIKENIIFGVSYDEYRYKSVIQ
ACQLEEDILKFPDKDYTVLGEGGIILSGGQRARISLARAVYKDADLYLMD
SPFGYLDIFTEKEIFESCVCKLMANKTRILVTSKLEHLKIADKILILHEG
SCYFYGTFSELQGQRPDFSSELMGFDSFDQFSAERRNSIITETLRRFSFW
NTYFRYITIHKSLIFVLILCVTIFLLEVAASLVLLLFLYYMIYIYVGIAD
TLLAMGIFRGLPLVHTLITVSKTLHQKMVHAVLYAPMSTFNSLKAGGILN
RFSKDTAILDDLLPLTVFDLIQLILIVIGAITVVSILQPYIFLASVPVIA
AFIVLRAYFLHTSQQLKQLESEARSPIFTHLVTSLKGLWTLRAFGRQPYF
ETLFHKALNLHTANWFLYLSTLRWFQMRIEMIFVVFFSAVAFISIITTGD
GPGRVGIILTLAMNIMGTLQWAVNSSIDVDSLMRSVSRIFKFIDGGQMTV
TDLTARYTEGGTAVLENISFSISSGQTVGLLGRTGSGKSTLLFAFLRLLN
TEGDIQIDGVSWNTVSLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWND
EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS
KAKILLLDEPSAHLDPITSQVIRKTLKHAFADCTVVLSESRLEAILECQR
FLVIEDNKMRQYESIQKLLSEKSSLRQ
3D structure
PDB6d3r Cryo-EM Visualization of an Active High Open Probability CFTR Anion Channel.
ChainA
Resolution4.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP A D174 W402 G462 G464 K465 T466 S467 D133 W361 G389 G391 K392 T393 S394
BS02 ATP A T1248 G1249 G1251 K1252 S1253 T934 G935 G937 K938 S939
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 18 23:17:49 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6d3r', asym_id = 'A', title = 'Cryo-EM Visualization of an Active High Open Probability CFTR Anion Channel.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6d3r', asym_id='A', title='Cryo-EM Visualization of an Active High Open Probability CFTR Anion Channel.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005254,0005524,0006811,0016020,0016887,0055085,0140359', uniprot = '', pdbid = '6d3r', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005254,0005524,0006811,0016020,0016887,0055085,0140359', uniprot='', pdbid='6d3r', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>