Structure of PDB 6d2z Chain A

Receptor sequence
>6d2zA (length=188) Species: 9606 (Homo sapiens) [Search protein sequence]
MGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKVFHLSLSQSV
VLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTS
GHAQFLDLVSEVDRVMEEFNLTTFYQDPSFQLSLAWCVGDARLQLEGQCL
QELQAIVDGFEDAEVLLRVHTEQVRCKSGNKFFSMPLK
3D structure
PDB6d2z Structural and mechanistic basis for preferential deadenylation of U6 snRNA by Usb1.
ChainA
Resolution1.18 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.6.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A M116 V118 H120 S122 N163 F170 Y202 S206 Q208 M39 V41 H43 S45 N86 F93 Y125 S129 Q131
Gene Ontology
Molecular Function
GO:0004518 nuclease activity
Biological Process
GO:0034477 U6 snRNA 3'-end processing

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Molecular Function
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Biological Process
External links
PDB RCSB:6d2z, PDBe:6d2z, PDBj:6d2z
PDBsum6d2z
PubMed30215753
UniProtQ9BQ65|USB1_HUMAN U6 snRNA phosphodiesterase 1 (Gene Name=USB1)

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