Structure of PDB 6cxv Chain A
Receptor sequence
>6cxvA (length=378) Species:
9606
(Homo sapiens) [
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YHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNM
LSIDHLTDHKSQRLARLVLGCITMAYVWGKGHGDVRKVLPRNIAVPYCQL
SKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFF
LVHLLVEIAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVF
HQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEGFWEDPKEFAGGSA
GQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNP
SVREFVLSKGDAGLREAYDACVKALVSLRSYHLQIVTKYILIPASQQPLE
AKGTGGTDLMNFLKTVRSTTEKSLLKEG
3D structure
PDB
6cxv
Inhibition Mechanisms of Human Indoleamine 2,3 Dioxygenase 1.
Chain
A
Resolution
2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
1.13.11.52
: indoleamine 2,3-dioxygenase.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
HEM
A
H167 V170 F214 F226 A264 G265 F270 R343 H346 I349 Y353 I354 G380 T382 F387 L388 V391
H153 V156 F200 F212 A250 G251 F256 R329 H332 I335 Y339 I340 G355 T357 F362 L363 V366
BS02
TRP
A
F163 H167 R231 G262 S263 I354 G378 T379
F149 H153 R217 G248 S249 I340 G353 T354
BS03
ZCW
A
F270 L342 R343 H346
F256 L328 R329 H332
Gene Ontology
Molecular Function
GO:0004833
tryptophan 2,3-dioxygenase activity
GO:0009055
electron transfer activity
GO:0016702
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0020037
heme binding
GO:0033754
indoleamine 2,3-dioxygenase activity
GO:0046872
metal ion binding
GO:0051213
dioxygenase activity
Biological Process
GO:0002376
immune system process
GO:0002666
positive regulation of T cell tolerance induction
GO:0002678
positive regulation of chronic inflammatory response
GO:0002830
positive regulation of type 2 immune response
GO:0006569
tryptophan catabolic process
GO:0006954
inflammatory response
GO:0007565
female pregnancy
GO:0019441
tryptophan catabolic process to kynurenine
GO:0019805
quinolinate biosynthetic process
GO:0032496
response to lipopolysaccharide
GO:0032693
negative regulation of interleukin-10 production
GO:0032735
positive regulation of interleukin-12 production
GO:0033555
multicellular organismal response to stress
GO:0034276
kynurenic acid biosynthetic process
GO:0034354
'de novo' NAD biosynthetic process from tryptophan
GO:0036269
swimming behavior
GO:0042098
T cell proliferation
GO:0042130
negative regulation of T cell proliferation
GO:0043065
positive regulation of apoptotic process
GO:0046006
regulation of activated T cell proliferation
GO:0070233
negative regulation of T cell apoptotic process
GO:0070234
positive regulation of T cell apoptotic process
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0030485
smooth muscle contractile fiber
GO:0032421
stereocilium bundle
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6cxv
,
PDBe:6cxv
,
PDBj:6cxv
PDBsum
6cxv
PubMed
29897749
UniProt
P14902
|I23O1_HUMAN Indoleamine 2,3-dioxygenase 1 (Gene Name=IDO1)
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