Structure of PDB 6chs Chain A

Receptor sequence
>6chsA (length=460) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
IKNPWEVVRQSPLDDRLDKLDGKIPRKRGAMCRHGPKGMCDYCTPLDPFN
PQYLEEKKIKYMSVHAYMRKINSATNRPELGSSFIPPLVEPYYRVKRDCP
SGHPQWPEGICTKCQPSAITLQPQPFRMVDHVEFASPQIIDRFLDAWRRT
GVQRLGILYGRYLEYDAVPLGIKAVVEAIYEPPQVDEIDGITLNPWENEQ
EVNQVAKYCGLEQVGVIWTDLLDAGKGDGSVVCKRHADSYFLAAQEIVFA
ARLQAQHPKPSKWSDTGRFGSNFVTCVVSGNEQGEISISAYQMSNDAVEM
VRADIIEPSADPTLMLVREETRYIPEVFYRKINEYGANVLENAKPAFPVE
YLFVTLTHGFPDSPSPLFTDNIFPIENREYVGEAQEVSAVAKALKVHEAD
APMNVSDFHLLCFIHQMSVLSKEEEALLCRVATLHDLAESFQLRSTTGWQ
TLHMILQSTG
3D structure
PDB6chs Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4.
ChainA
Resolution4.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C160 H162 C168 C171 C32 H34 C40 C43
BS02 ZN A H231 K241 C242 H103 K113 C114
Gene Ontology
Molecular Function
GO:0031625 ubiquitin protein ligase binding
GO:0043130 ubiquitin binding
GO:0046872 metal ion binding
Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0015031 protein transport
GO:0051028 mRNA transport
Cellular Component
GO:0005634 nucleus
GO:0031965 nuclear membrane
GO:0048471 perinuclear region of cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6chs, PDBe:6chs, PDBj:6chs
PDBsum6chs
PubMed29967539
UniProtG0S0B4

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