Structure of PDB 6cdo Chain A

Receptor sequence

>6cdoA (length=230) Species: 10090 (Mus musculus) [Search protein sequence]

QVQLLQSGAELVRPGASVTLSCKASGYAFSDYEIHWVKQTPVRGLDWIGA
FDPKSGASASNQKVKGRAILTADKSSSTAYMELRSLTSEDSAVYYCTRLR
YFGYFDVWGTGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY
FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYI
CNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ

3D structure

PDB

6cdo Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1.

Chain

Resolution

2.099 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	A	E33 A57 S58 L99 Y101 F102 G103	E33 A57 S58 L99 Y101 F102 G103

External links

PDB	RCSB:6cdo, PDBe:6cdo, PDBj:6cdo
PDBsum	6cdo
PubMed	29867235

[Back to BioLiP]