Structure of PDB 6c6c Chain A

Receptor sequence
>6c6cA (length=264) Species: 10090 (Mus musculus) [Search protein sequence]
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQG
KLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEM
YPSESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSAT
VQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSGHRQLVCHVSGFYP
KPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLACRV
KHSSLGGQDIILYW
3D structure
PDB6c6c A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides.
ChainA
Resolution2.08 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC A S114 W129 G130 N165 S105 W120 G121 N156
BS02 EMG A C12 V30 F70 Y73 S76 F77 D80 I98 A102 F120 W133 W142 L143 D153 T156 C6 V24 F64 Y67 S70 F71 D74 I92 A96 F111 W124 W133 L134 D144 T147
External links
PDB RCSB:6c6c, PDBe:6c6c, PDBj:6c6c
PDBsum6c6c
PubMed31391251
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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