Structure of PDB 6byt Chain A

Receptor sequence
>6bytA (length=480) Species: 1537994 (Alteromonas sp. LOR) [Search protein sequence]
GVLLESQTKITDGALHFDGKKLNHNTFENPSKSQAYDYFFGRNISAHGDA
VKPYKHFVFMTWYKGGKEERNVMLSRFNTKTGVVKTIQFPHRHTGFRGDP
LVGESHNTIGLAVSPLNGTIHMVYDMHAYVDDDETGRFKGRFVDDFFRYS
FSVAGAADVPDDEFTLEQFVKDTSELSQGADDYKHLTMTGNLQDKENFSA
LTYPKFYTSDDGELLHYMRWGGNNNGAYYFNKYDAKNQKWTRFTPFNHKD
QKTHGNAYNWGLYGQMKYINGKLRVGFQQNSANNDDRFKYQNGVYYAYSD
HPDGLGNWKNVDGEDMTWPLVNSDEIKIFEPGDYIDHTAPNSVHIVTGFD
WTVTENDDVHFITHVRSTDTKRSDYKEVSIHAFKPANAVDFTITTDFTGA
DSIYTSGDSIFIIGLKNGYPFVEKAKGGSNDFEVVYQQASGVKFDHGTIH
IENGKAYYYLMEKGAGNALPLHLQVIDLGV
3D structure
PDB6byt Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism.
ChainA
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 83Y A F136 G262 N263 F96 G222 N223
BS02 BDP A H146 Y243 H106 Y203
BS03 83Y A S145 H146 Y243 S105 H106 Y203
BS04 CA A D212 D222 K224 D172 D182 K184
BS05 CA A N323 D326 F328 N283 D286 F288
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:6byt, PDBe:6byt, PDBj:6byt
PDBsum6byt
PubMed29382716
UniProtA0A109PTH9|UL24S_ALTSL Ulvan lyase, short isoform (Gene Name=LOR_107)

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