Structure of PDB 6byp Chain A

Receptor sequence
>6bypA (length=481) Species: 1537994 (Alteromonas sp. LOR) [Search protein sequence]
SGVLLESQTKITDGALHFDGKKLNHNTFENPSKSQAYDYFFGRNISAHGD
AVKPYKHFVFMTWYKGGKEERNVMLSRFNTKTGVVKTIQFPHRHTGFRGD
PLVGESHNTIGLAVSPLNGTIHMVYDMHAYVDDDETGRFKGRFVDDFFRY
SFSVAGAADVPDDEFTLEQFVKDTSELSQGADDYKHLTMTGNLQDKENFS
ALTYPKFYTSDDGELLHYMRWGGNNNGAYYFNKYDAKNQKWTRFTPFNHK
DQKTHGNAYNWGLYGQMKYINGKLRVGFQQRSANNDDRFKYQNGVYYAYS
DHPDGLGNWKNVDGEDMTWPLVNSDEIKIFEPGDYIDHTAPNSVHIVTGF
DWTVTENDDVHFITHVRSTDTKRSDYKEVSIHAFKPANAVDFTITTDFTG
ADSIYTSGDSIFIIGLKNGYPFVEKAKGGSNDFEVVYQQASGVKFDHGTI
HIENGKAYYYLMEKGAGNALPLHLQVIDLGV
3D structure
PDB6byp Structure-function analyses of a PL24 family ulvan lyase reveal key features and suggest its catalytic mechanism.
ChainA
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D212 D222 K224 D173 D183 K185
BS02 CA A N323 D326 F328 N284 D287 F289
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:6byp, PDBe:6byp, PDBj:6byp
PDBsum6byp
PubMed29382716
UniProtA0A109PTH9|UL24S_ALTSL Ulvan lyase, short isoform (Gene Name=LOR_107)

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