Structure of PDB 6bnk Chain A

Receptor sequence
>6bnkA (length=272) Species: 10090 (Mus musculus) [Search protein sequence]
YTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGK
LSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEMY
PGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTS
ATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAHGHRQLV
CHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGE
EAGLACRVKHSSLGGQDIILYW
3D structure
PDB6bnk Dual Modifications of alpha-Galactosylceramide Synergize to Promote Activation of Human Invariant Natural Killer T Cells and Stimulate Anti-tumor Immunity.
ChainA
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AGH A S28 L66 F70 Y73 S76 F77 D80 W133 W142 L150 D153 T156 F171 S21 L59 F63 Y66 S69 F70 D73 W126 W135 L143 D146 T149 F164 PDBbind-CN: -logKd/Ki=6.99,Kd=102nM
External links
PDB RCSB:6bnk, PDBe:6bnk, PDBj:6bnk
PDBsum6bnk
PubMed29576533
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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