Structure of PDB 6bmf Chain A

Receptor sequence
>6bmfA (length=277) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKP
TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK
QLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN
DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT
PCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAPDLTIKDF
LKAIKSTRPTVNEDDLLKQEQFTRDFG
3D structure
PDB6bmf The AAA ATPase Vps4 binds ESCRT-III substrates through a repeating array of dipeptide-binding pockets.
ChainA
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A K205 W206 K90 W91
BS02 ADP A D134 V135 A136 G176 K179 S180 Y181 G336 S337 D19 V20 A21 G61 K64 S65 Y66 G221 S222
BS03 BEF A P175 G176 K179 P60 G61 K64
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6bmf, PDBe:6bmf, PDBj:6bmf
PDBsum6bmf
PubMed29165244
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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