Structure of PDB 6bef Chain A

Receptor sequence
>6befA (length=540) Species: 10254 (Vaccinia virus WR) [Search protein sequence]
AMNNTIINSLISIKRSNVFAVDSQIPTLYMPQYISLSGVMTNDNQAIASF
EIRDQYITALNHLVLSLELPEVKGMGRFGYVPYVGYKCINHVSISSCNGV
IWEIEGEELYNNCINNTIALKHSGYSSELNDISIGLTPNDTIKEPSTVYV
YIKTPFDVEDTFSSLKLSSKITVTVTFNPVSDIVIRDSSFDFETFNKEFV
YVPELSFIGYMVKNVQIKPSFIEKPRRVIGQINQPTATVTEVHAATSLSV
YTKPYYGNTDNKFISYPGYSQDEKDYIDAYVSRLLDDLVIVSDGPPTGYP
ESAEIVEVPEDGIVSIQDADVYVKIDNVPDNMSVYLHTNLLMFGTRKNSF
IYNISKKFSAITGTYSDATKRTIFAHISHSINIIDTSIPVSLWTSQRNVY
NGDNRSAESKAKDLFINDPFIKGIDFKNKTDIISRLEVRFGNDVLYSENG
PISRIYNELLTKSNNGTRTLTFNFTPKIFFRPTTITANVSRGKDKLSVRV
VYSTMDVNHPIYYVQKQLVVVCNDLYKVSYDQGVSITKIM
3D structure
PDB6bef Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin.
ChainA
Resolution3.21 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 3YI A Q27 P483 F486 Q24 P476 F479 PDBbind-CN: -logKd/Ki=3.98,Kd=104uM
Gene Ontology
Molecular Function
GO:0042802 identical protein binding
Biological Process
GO:0046677 response to antibiotic
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bef, PDBe:6bef, PDBj:6bef
PDBsum6bef
PubMed30068608
UniProtP68440|PG125_VACCW Scaffold protein OPG125 (Gene Name=OPG125)

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