Structure of PDB 6bda Chain A

Receptor sequence

>6bdaA (length=295) Species: 170178 (Ophiostoma novo-ulmi subsp. americana) [Search protein sequence]

SINPWILTGFADAEGSFLLRIRNNNKSSVGYSTELGFQITLHNKDKSILE
NIQSTWKVGVIANSGDNAVSLKVTRFEDLKVIIDHFEKYPLITQKLGDYM
LFKQAFCVMENKEHLKINGIKELVRIKAKLNWGLTDELKFAFPEIISKER
SLINKNIPNFKWLAGFTSGEGCFFVNLIKSKSKLGVQVQLVFSITQHIKD
KNLMNSLITYLGCGYIKEKNKSEFSWLDFVVTKFSDINDKIIPVFQENTL
IGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGRVF

3D structure

PDB

6bda Wild-type I-OnuI bound to A3G substrate (post-cleavage complex)

Chain

Resolution

1.88 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	A	K34 S35 S36 E42 V68 R83 F84 H122 L123 E178 T203 Q204 H205 F232 W234	K26 S27 S28 E34 V60 R75 F76 H114 L115 E170 T195 Q196 H197 F224 W226
BS02	dna	A	G177 C180 F182 N184 I186 T203 K262 K294 N298 K299	G169 C172 F174 N176 I178 T195 K254 K286 N290 K291
BS03	dna	A	E22 T48 L49 H50 S190 K191 Q195 Q197 Y223 K225 K227 K229 W234 T240 K241 F242 H281	E14 T40 L41 H42 S182 K183 Q187 Q189 Y215 K217 K219 K221 W226 T232 K233 F234 H273
BS04	dna	A	A21 S24 R28 R30 K103 N139 W140	A13 S16 R20 R22 K95 N131 W132
BS05	MG	A	E22 G177	E14 G169
BS06	MG	A	A21 E178	A13 E170

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity

View graph for
Molecular Function

External links

PDB	RCSB:6bda, PDBe:6bda, PDBj:6bda
PDBsum	6bda
PubMed
UniProt	Q4VWW5

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