Structure of PDB 6bd0 Chain A

Receptor sequence

>6bd0A (length=300) Species: 170178 (Ophiostoma novo-ulmi subsp. americana) [Search protein sequence]

ESRRESINPWILTGFADAEGSFLLRIRNNNKSSVGYSTELGFQITLHNKD
KSILENIQSTWKVGVIANSGDNAVSLKVTRFEDLKVIIDHFEKYPLITQK
LGDYMLFKQAFCVMENKEHLKINGIKELVRIKAKLNWGLTDELKKAFPEI
ISKERSLINKNIPNFKWLAGFTSGEGCFFVNLIKSKSKLGVQVQLVFSIT
QHIKDKNLMNSLITYLGCGYIKEYNKSEFSWLAFVVTKFSDINDKIIPVF
QENTLIGVKLEDFEDWCKVAKLIEEKKHLTESGLDEIKKIKLNMNKGRVF

3D structure

PDB

6bd0 I-OnuI K227Y, D236A bound to cognate substrate (pre-cleavage complex)

Chain

Resolution

1.45 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	A	K34 S35 S36 E42 S72 R83 F84 H122 L123 G177 E178 G179 C180 F182 N184 I186 T203 Q204 H205 F232 W234 K262 K294 N298 K299	K31 S32 S33 E39 S69 R80 F81 H119 L120 G174 E175 G176 C177 F179 N181 I183 T200 Q201 H202 F229 W231 K259 K291 N295 K296
BS02	dna	A	A21 E22 G23 S24 R28 R30 Q46 T48 L49 H50 K80 K103 N139 W140 T143 K189 S190 K191 Q195 Q197 Y223 K225 Y227 K229 W234 T240 K241 F242	A18 E19 G20 S21 R25 R27 Q43 T45 L46 H47 K77 K100 N136 W137 T140 K186 S187 K188 Q192 Q194 Y220 K222 Y224 K226 W231 T237 K238 F239
BS03	CA	A	E22 G177	E19 G174
BS04	CA	A	A21 E178	A18 E175

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity

View graph for
Molecular Function

External links

PDB	RCSB:6bd0, PDBe:6bd0, PDBj:6bd0
PDBsum	6bd0
PubMed
UniProt	Q4VWW5

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