Structure of PDB 6bbp Chain A
Receptor sequence
>6bbpA (length=520) Species:
9606,10090
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MGHHHHHHGSTTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVA
QFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADLNLVQALRQF
LWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNT
SLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPE
DDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK
EPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVE
GNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDMLATRKRRIANKKGKV
LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY
KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH
RIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPS
CATSGDGLYEGLTWLTSNYN
3D structure
PDB
6bbp
Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors.
Chain
A
Resolution
35.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number
?
3.6.5.2
: small monomeric GTPase.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
GTP
A
D420 A421 G423 K424 T425 T426 T439 T442 G463 G464 N520 K521 D523 L524 C553 A554 T555
D368 A369 G371 K372 T373 T374 T387 T390 G411 G412 N468 K469 D471 L472 C501 A502 T503
BS02
MG
A
T425 T442
T373 T390
BS03
4IP
A
K273 G275 G276 R277 V278 T280 R284 Y295 R305 K343 N354 H355
K221 G223 G224 R225 V226 T228 R232 Y243 R253 K291 N302 H303
Gene Ontology
Molecular Function
GO:0003924
GTPase activity
GO:0003925
G protein activity
GO:0005085
guanyl-nucleotide exchange factor activity
GO:0005515
protein binding
GO:0005525
GTP binding
GO:0016787
hydrolase activity
GO:0019003
GDP binding
GO:0031996
thioesterase binding
GO:0035591
signaling adaptor activity
Biological Process
GO:0001889
liver development
GO:0006886
intracellular protein transport
GO:0007155
cell adhesion
GO:0007399
nervous system development
GO:0010975
regulation of neuron projection development
GO:0010976
positive regulation of neuron projection development
GO:0015031
protein transport
GO:0016192
vesicle-mediated transport
GO:0030154
cell differentiation
GO:0030838
positive regulation of actin filament polymerization
GO:0030866
cortical actin cytoskeleton organization
GO:0032012
regulation of ARF protein signal transduction
GO:0032456
endocytic recycling
GO:0034394
protein localization to cell surface
GO:0035020
regulation of Rac protein signal transduction
GO:0036010
protein localization to endosome
GO:0048261
negative regulation of receptor-mediated endocytosis
GO:0048488
synaptic vesicle endocytosis
GO:0050714
positive regulation of protein secretion
GO:0051301
cell division
GO:0051489
regulation of filopodium assembly
GO:0051549
positive regulation of keratinocyte migration
GO:0060998
regulation of dendritic spine development
GO:0072659
protein localization to plasma membrane
GO:0090162
establishment of epithelial cell polarity
GO:0097178
ruffle assembly
GO:0097284
hepatocyte apoptotic process
GO:0099562
maintenance of postsynaptic density structure
GO:0120183
positive regulation of focal adhesion disassembly
GO:1902217
erythrocyte apoptotic process
GO:1903078
positive regulation of protein localization to plasma membrane
GO:1903438
positive regulation of mitotic cytokinetic process
GO:1905345
protein localization to cleavage furrow
GO:1905606
regulation of presynapse assembly
GO:1990090
cellular response to nerve growth factor stimulus
GO:2000009
negative regulation of protein localization to cell surface
GO:2000171
negative regulation of dendrite development
Cellular Component
GO:0001726
ruffle
GO:0005737
cytoplasm
GO:0005768
endosome
GO:0005769
early endosome
GO:0005794
Golgi apparatus
GO:0005829
cytosol
GO:0005886
plasma membrane
GO:0005925
focal adhesion
GO:0005938
cell cortex
GO:0016020
membrane
GO:0030139
endocytic vesicle
GO:0030496
midbody
GO:0031527
filopodium membrane
GO:0031901
early endosome membrane
GO:0032154
cleavage furrow
GO:0042995
cell projection
GO:0055037
recycling endosome
GO:0055038
recycling endosome membrane
GO:0070062
extracellular exosome
GO:0090543
Flemming body
GO:0098793
presynapse
GO:0098794
postsynapse
GO:0098978
glutamatergic synapse
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6bbp
,
PDBe:6bbp
,
PDBj:6bbp
PDBsum
6bbp
PubMed
29276036
UniProt
O08967
|CYH3_MOUSE Cytohesin-3 (Gene Name=Cyth3);
P62330
|ARF6_HUMAN ADP-ribosylation factor 6 (Gene Name=ARF6)
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