Structure of PDB 6ajo Chain A

Receptor sequence
>6ajoA (length=202) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]
AGAQDFVPHTADLAELAAAAGECRGCGLYRDATQAVFGAGGRSARIMMIG
EQPGDKEDLAGLPFVGPAGRLLDRALEAADIDRDALYVTNAVKHFKFTRR
RIHKTPSRTEVVACRPWLIAEMTSVEPDVVVLLGATAAKALLGNDFRVTQ
HRGEVLHVDDVPGDPALVATVHPSSLLRGPKEERESAFAGLVDDLRVAAD
VR
3D structure
PDB6ajo Covalent binding of uracil DNA glycosylase UdgX to abasic DNA upon uracil excision.
ChainA
Resolution2.269 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A Q53 G67 P68 A69 H109 G140 A141 V177 H178 S180 S181 R184 Q52 G66 P67 A68 H103 G134 A135 V171 H172 S174 S175 R178
BS02 SF4 A C24 G26 C27 K94 H95 C120 W123 C23 G25 C26 K93 H94 C114 W117
BS03 URA A E52 Q53 E58 P64 F65 N91 H178 E51 Q52 E57 P63 F64 N90 H172
Gene Ontology
Molecular Function
GO:0004844 uracil DNA N-glycosylase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
GO:0097506 deaminated base DNA N-glycosylase activity
Biological Process
GO:0006281 DNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:6ajo, PDBe:6ajo, PDBj:6ajo
PDBsum6ajo
PubMed31101917
UniProtA0QP43

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