Structure of PDB 6a5o Chain A

Receptor sequence
>6a5oA (length=1408) Species: 644223 (Komagataella phaffii GS115) [Search protein sequence]
SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEAD
APKVVSRGGCGNTQPVVRKDGMKLWGTWKKSRDAQPERKLLTPGEILNVF
KHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDD
LTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQ
PQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEL
DQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGD
RIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK
VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQI
VSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVP
QPAILKPKPLWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGK
VMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNG
FSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLR
ESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQM
SACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQ
EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLG
DIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIKPD
VIEYAADILGDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNL
RRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEA
QQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHP
GEMVGVIAAQSIGEPATQMNVTLGVPRLKEILNVAKNIKTPALTVYLDRE
IALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAY
FSQSPWLLRLELDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADK
LIIRCRVIEEDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESG
EYKNEELWALETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRS
SLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGA
LMRCSFEETVEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMID
EKLLTSLP
3D structure
PDB6a5o Structural basis of the nucleosome transition during RNA polymerase II passage.
ChainA
Resolution9.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A A252 M253 R447 D486 A240 M241 R435 D474
BS02 dna A K318 K333 R345 R351 T832 A833 E1406 E1407 E1410 K306 K321 R333 R339 T820 A821 E1357 E1358 E1361
BS03 dna A K101 W139 K318 H1390 K100 W138 K306 H1341
BS04 ZN A C67 C70 H80 C66 C69 H79
BS05 ZN A C148 C168 C147 C160
BS06 MG A D482 D484 D470 D472
Gene Ontology
Molecular Function
GO:0001055 RNA polymerase II activity
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
GO:0006366 transcription by RNA polymerase II
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005665 RNA polymerase II, core complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6a5o, PDBe:6a5o, PDBj:6a5o
PDBsum6a5o
PubMed30287617
UniProtC4R4Y0

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