Structure of PDB 5zwa Chain A

Receptor sequence
>5zwaA (length=264) Species: 28901 (Salmonella enterica) [Search protein sequence]
RALQTDIVAVQSQVVYGSVGNSIAVPAIKAQGLRVTAVPTVLFSNTPHYK
TFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSADQIVLLSKWLM
AIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQGLTPNVF
ELEMLSGKPCRTLEEAVAAAQSLLSTLKWVVITSAPGSLETITVAVTAQV
VEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMT
WTQQCGCDELILPP
3D structure
PDB5zwa Structural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
ChainA
Resolution2.45 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.1.35: pyridoxal kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A N164 T200 S201 H225 R227 V228 T235 G236 V264 M268 N148 T183 S184 H206 R208 V209 T216 G217 V245 M249
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0008478 pyridoxal kinase activity
GO:0008902 hydroxymethylpyrimidine kinase activity
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0009443 pyridoxal 5'-phosphate salvage
GO:0016310 phosphorylation
GO:0042816 vitamin B6 metabolic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5zwa, PDBe:5zwa, PDBj:5zwa
PDBsum5zwa
PubMed31116912
UniProtA0A0F7J8S0

[Back to BioLiP]