Structure of PDB 5zqg Chain A

Receptor sequence
>5zqgA (length=292) Species: 28295 (Porcine epidemic diarrhea virus) [Search protein sequence]
AGLRKMAQPSGVVEKCIVRVCYGNMALNGLWLGDTVMCPRHVIAIDYDYA
LSVLRLHNFSISSGNVFLGVVGVTMRGALLQIKVNQNNVHTPKYTYRTVR
PGESFNILACYDGAAAGVYGVNMRSNYTIRGSFINGAAGSPGYNINNGTV
EFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAF
LYAALINGSTWWLSSSRIAVDRFNEWAVHNGMTTVVNTDCFSILAAKTGV
DVQRLLASIQSLHKNFGGKQILGYTSLTDEFTTGEVIRQMYG
3D structure
PDB5zqg Complex structure of PEDV 3CLpro mutant (C144A) with NEMO peptite substrate
ChainA
Resolution1.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.1.1.57: methyltransferase cap1.
3.4.19.12: ubiquitinyl hydrolase 1.
3.6.4.12: DNA helicase.
3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A M25 A26 H41 F139 G142 A143 A144 H162 Q163 L164 E165 D186 T189 M25 A26 H41 F133 G136 A137 A138 H156 Q157 L158 E159 D180 T183
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0019082 viral protein processing

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5zqg, PDBe:5zqg, PDBj:5zqg
PDBsum5zqg
PubMed
UniProtR4JK63

[Back to BioLiP]