Structure of PDB 5ze4 Chain A

Receptor sequence
>5ze4A (length=569) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
QSVTADPSPPTNKLNKYSSRITEPKSQGGSQAILHGVGLSDDDLLKPQIG
ISSVWYEGNTCNMHLLKLSEAVKEGVENAGMVGFRFNTIGVSDAISMGTR
GMCFSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNR
PGIMVYGGTIKPGHFQDKTYDIVSAFQSYGEFVSGSISDEQRKTVLHHSC
PGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYL
LELLKMDLKPRDIITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLEL
TLDDFQKVSDAVPFLADLKPSGKYVMEDIHKIGGTPAVLRYLLELGLMDG
DCMTVTGQTLAQNLENVPSLTEGQEIIRPLSNPIKETGHIQILRGDLAPD
GSVAKITGKEGLYFSGPALVFEGEESMLAAISADPMSFKGTVVVIRGEGP
KGGPGMPEMLTPTSAIMGAGLGKECALLTDGRFSGGSHGFVVGHICPEAQ
EGGPIGLIKNGDIITIDIGAARIDTQVSPEEMNDRRKKWTAPAYKVNRGV
LYKYIKNVQSASDGCVTDE
3D structure
PDB5ze4 Resistance-gene-directed discovery of a natural-product herbicide with a new mode of action.
ChainA
Resolution2.11 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.2.1.9: dihydroxy-acid dehydratase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FES A C66 A99 C139 C211 C61 A94 C134 C206
BS02 MG A D98 D140 E463 D93 D135 E458
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004160 dihydroxy-acid dehydratase activity
GO:0005507 copper ion binding
GO:0016829 lyase activity
GO:0016836 hydro-lyase activity
GO:0046872 metal ion binding
GO:0051537 2 iron, 2 sulfur cluster binding
Biological Process
GO:0008652 amino acid biosynthetic process
GO:0009082 branched-chain amino acid biosynthetic process
GO:0009097 isoleucine biosynthetic process
GO:0009099 L-valine biosynthetic process
GO:0009553 embryo sac development
GO:0009555 pollen development
GO:0009651 response to salt stress
GO:0048364 root development
Cellular Component
GO:0005829 cytosol
GO:0009507 chloroplast
GO:0009536 plastid
GO:0009570 chloroplast stroma

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ze4, PDBe:5ze4, PDBj:5ze4
PDBsum5ze4
PubMed29995859
UniProtQ9LIR4|ILVD_ARATH Dihydroxy-acid dehydratase, chloroplastic (Gene Name=DHAD)

[Back to BioLiP]