Structure of PDB 5zdk Chain A

Receptor sequence
>5zdkA (length=543) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MGLVPECFITELVERDLKEGKYAKLVTRFPPEPNGYLHIGHARSIVLNFG
LAQDYGGECNLRFDDTNPETEKEEYARAIEEDVRWLGFRPTRVLYASDYF
ETMYQCALVLIQEGKAYVDDLPEEEMSELRAQGKPSPYRERSVEENLELF
ERMRRGEFPTGSRVLRAKIDPAHPNFKLRDPVLYRIVHAPHYHVGDRWVI
YPMYDFAHPLEDFIEGVTHSLCTLEFENNRTVYDWVIENLKGKCGLPTSP
RPHQYEFARLDLSHTVLSKRKLIKLVEGGYVSGWDDPRLPTLRGLRRRGV
RPEAIVEFVRKTGISRNEAQIEMDLFEEVVRDDLNPIAPRVLGVVDPLKV
VLTNYEGEEWIEAPYWPRDIPKEGTRPLPFSPELYIERTDFSLNPPKGWK
RLAPGQRVRLRHAYVIELEDVVEEGGEVRLLKARIVPGTLGANPEDGVRP
KGVIHWVSARHALPVEFRLYGRLFRTKDPEEGGDFLQNLNPEALVVKRGF
IEPSVAQDPEDTRYQLERLGYFWRDPVDSRPEALVMNRIVPLK
3D structure
PDB5zdk Structural and functional analysis of Glutaminyl-tRNA synthetase (TtGlnRS) from Thermus thermophilus HB8 and its complexes
ChainA
Resolution2.45 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.1.18: glutamine--tRNA ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP A F29 P31 E32 G40 H41 T223 R259 L260 F29 P31 E32 G40 H41 T223 R259 L260
BS02 CS A W366 P367 I370 E373 W366 P367 I370 E373
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004819 glutamine-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
GO:0006425 glutaminyl-tRNA aminoacylation
GO:0043039 tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5zdk, PDBe:5zdk, PDBj:5zdk
PDBsum5zdk
PubMed30248426
UniProtQ5SKU4

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