Structure of PDB 5z9s Chain A

Receptor sequence
>5z9sA (length=765) Species: 216816 (Bifidobacterium longum) [Search protein sequence]
AGERIADLLSRMTLEEKVGQMMQLDARGGDLEDLIVNKHVGSILHTSPED
LSRAAKTVNEKTRLGIPLIIGDDCIHGYSFWPGATIFPSQLGMAVSWDPD
KVKAAGRATAEEVSCTGVHWTFSPVLCIARDTRWGRVDETFGEDPMLIGE
LASAMVKGYQGGAKAGEALPKNAILACAKHFAGYSETQGGRDASEADLSH
RKLESWFLPPFERVAKEGCGTFMLGYESIEGVPVTFNKWLLTDKLRGAWK
YNGTLITDWDNIGRSVWEQHVKPDYVHAAADAVKAGNDLVMTTPQFYEGA
IEAVKTGLLDESLIDDAVSRILALKFRLGLFEDPRLPDAERIKAVIGSAE
HQQINLELVRESIALLRNDGALPFAANKVKRIAVVGPLADDAQNQLGDWT
GNSGQVSWMPDGQPRDMITTVLDGLTQLTADDCEVVYSRGANVIDLVPDP
AGEFYPDGQPRPKIGVSAAVDQALIDEAVANARQSDLIVAVVGDVVQLVG
ETCSTATLELLGGQNALLDALAAVSRETGKPMVTVLISSKPQVLPASIVG
EYGVFAKRVSDPETGTGSILWAPNPGMRGGQAIAEIILGLTNPSGRLPIT
FPRHAGQLPVYYNQIRGQHGDRYADLTQDPAFAFGEGLSYTTFAYGEPTI
VGGASNADGTFAETDTVHAEITLTNTGERAGVEIVQAYIGDIVTSYSWTD
RELKAFQRVALEPGETKTVAFEIPVANCTIVDPDANRIVEPGEFELLIGH
SSRREDLKRTTFTVA
3D structure
PDB5z9s Functional and structural characterization of a beta-glucosidase involved in saponin metabolism from intestinal bacteria.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A H68 D96 F145 R159 K202 H203 M246 Y249 D281 M314 E524 H45 D73 F122 R136 K179 H180 M223 Y226 D258 M291 E501
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009251 glucan catabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5z9s, PDBe:5z9s, PDBj:5z9s
PDBsum5z9s
PubMed29421652
UniProtA0A133LV16

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