Structure of PDB 5ytv Chain A

Receptor sequence
>5ytvA (length=75) Species: 9606 (Homo sapiens) [Search protein sequence]
KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNKYLRSVG
DGETVEFDVVEGEKGAEAANVTGPG
3D structure
PDB5ytv Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA.
ChainA
Resolution1.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A K64 W65 N67 N70 Y72 F74 D83 F85 H87 K118 K13 W14 N16 N19 Y21 F23 D32 F34 H36 K64 PDBbind-CN: Kd=1.26uM
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:5ytv, PDBe:5ytv, PDBj:5ytv
PDBsum5ytv
PubMed31160337
UniProtP67809|YBOX1_HUMAN Y-box-binding protein 1 (Gene Name=YBX1)

[Back to BioLiP]