Structure of PDB 5ytt Chain A

Receptor sequence
>5yttA (length=75) Species: 9606 (Homo sapiens) [Search protein sequence]
KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNKYLRSVG
DGETVEFDVVEGEKGAEAANVTGPG
3D structure
PDB5ytt Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA.
ChainA
Resolution1.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A W65 N67 N70 Y72 F74 D83 F85 H87 K118 G119 A120 W14 N16 N19 Y21 F23 D32 F34 H36 K64 G65 A66 PDBbind-CN: Kd=3.77uM
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:5ytt, PDBe:5ytt, PDBj:5ytt
PDBsum5ytt
PubMed31160337
UniProtP67809|YBOX1_HUMAN Y-box-binding protein 1 (Gene Name=YBX1)

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