Structure of PDB 5yt0 Chain A

Receptor sequence
>5yt0A (length=331) Species: 272557 (Aeropyrum pernix K1) [Search protein sequence]
LRQPIVVVLGHVDHGKTTLLDKIRRTAVAAKGITQHIGASIVPADVIEKI
AEPLKKVIPVKLVIPGLLFIDTPGHELFSNLRRRGSVADFAILVVDIMEG
FKPQTYEALELLKERRVPFLIAANKIDRIPGWKPNPDAPFIETIRRQDPK
VREILEQRVYEIVGKMYEAGLPAELFTRIKDFRRKIAIVPVSARTGEGIP
ELLAVLAGLTQTYLKERLRYAEGPAKGVVLEVKEMQGFGTVVDAVIYDGV
LKKEDIIVVGGREGPIVTRVRALLMPAPFVQVDRVYAAAGVRIAAPGLDD
VIAGSPIYAAESEEEARKLMEAVQREIEELR
3D structure
PDB5yt0 The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation
ChainA
Resolution1.89 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A V73 I74 R162 R169 F193 T194 R195 I196 K197 F199 V57 I58 R145 R152 F176 T177 R178 I179 K180 F182
BS02 GDP A D26 G28 K29 T30 T31 N141 K142 D144 R145 S209 A210 R211 D13 G15 K16 T17 T18 N124 K125 D127 R128 S192 A193 R194
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:5yt0, PDBe:5yt0, PDBj:5yt0
PDBsum5yt0
PubMed29844065
UniProtQ9Y9B3|IF2P_AERPE Probable translation initiation factor IF-2 (Gene Name=infB)

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