Structure of PDB 5ylx Chain A

Receptor sequence
>5ylxA (length=275) Species: 9823 (Sus scrofa) [Search protein sequence]
GPHSLSYFSTAVSRPDRGDSRFIAVGYVDDTQFVRFDSDAPNPRMEPRVP
WIQQEGQEYWAEETRKVKDNAQTYRVNLKALRGYYNQSVAGSHTLQSMFG
CYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAA
DAAEQMRSYLQGLCVESLRKYLEMGKDTLQRAEPPKTHVTRHPSSDLGAT
LRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVP
PGEEQSYTCHVQHEGLQEPLTLRWD
3D structure
PDB5ylx Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I).
ChainA
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 E63 K66 V67 N70 T73 N77 L81 Y84 L95 F99 D116 Y123 T143 K146 W147 Y159 S167 Y171 Y7 E63 K66 V67 N70 T73 N77 L81 Y84 L95 F99 D116 Y123 T143 K146 W147 Y159 S167 Y171
Gene Ontology
Biological Process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I
Cellular Component
GO:0016020 membrane
GO:0030670 phagocytic vesicle membrane
GO:0042612 MHC class I protein complex
GO:0098553 lumenal side of endoplasmic reticulum membrane

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Biological Process
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Cellular Component
External links
PDB RCSB:5ylx, PDBe:5ylx, PDBj:5ylx
PDBsum5ylx
PubMed31969884
UniProtH6TIB1

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