Structure of PDB 5yl1 Chain A

Receptor sequence
>5yl1A (length=185) Species: 430911 (Penaeus vannamei nodavirus) [Search protein sequence]
ISRLGPDSDFLTSVVAKASTSIVTPADRILVKQPLSASSFPGTRITGLSS
YWERYKWLSAVARYVPAVPNTVACQFVMYIDTDPLDDPSNISDDNQIVRQ
AVSQAGSNQFNFNTSKTVPLIVRADNQYYYTGVDKQNLRFSLQGILYIIQ
VTDLINFNGELITQDLTCGSLFLDWLVNFSIPQIN
3D structure
PDB5yl1 The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
ChainA
Resolution3.12 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A E118 N250 E53 N185
BS02 CA A E118 Q248 E53 Q183
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:5yl1, PDBe:5yl1, PDBj:5yl1
PDBsum5yl1
PubMed30820467
UniProtA5H7Q8

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