Structure of PDB 5yko Chain A

Receptor sequence
>5ykoA (length=487) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
RWNPSEACRPLVDDAPIFYPTNEDFDDPLGYIEKLRSKAESYGICRIVPP
VAWRPPCPLKEKKIWENSKFPTRIQFIDLLQNRFGFQTGPDFTLAAFQKY
DEYFKECYFQPKVKDLEGEYWRIVEQATDEVEVYYGADLETKKFGSGFPK
YKPGYPISEADQYSQCGWNLNNLSRLPGSVLAFESCDISGVIVPWLYVGM
CFSTFCWHVEDHHLYSMNYLHTGDPKVWYGIPGNHAESFENVMKKRLPDL
FEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFN
CGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEAT
YCLWELSLSKKKTPVIARWKRVCSEDGLLTKAVKKRVQMEEERLNHLQDG
FSLRKMEGDFDNKRERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCS
CESKDRYILIRHTLDELWALVRALEGDLDAIDLWASK
3D structure
PDB5yko Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A D239 W296 E311 D312 Q361 L362 V410 N411 S436 E516 D138 W195 E210 D211 Q260 L261 V309 N310 S335 E415
BS02 ZN A C519 C522 C542 H545 C418 C421 C441 H444
BS03 ZN A C533 C535 C550 C552 C432 C434 C449 C451
External links
PDB RCSB:5yko, PDBe:5yko, PDBj:5yko
PDBsum5yko
PubMed29233856
UniProtQ8GUI6|JMJ14_ARATH Lysine-specific demethylase JMJ14 (Gene Name=JMJ14)

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