Structure of PDB 5yka Chain A

Receptor sequence
>5ykaA (length=297) Species: 481448 (Methylacidiphilum infernorum V4) [Search protein sequence]
QPIIQFDAESWEAEFTQEIQDKAIEGLESGSVLFFPKLNFPLLTEELKFL
DPTWVSGAKNISYDPRSATLKGVEGKSEDLRLLSGLLKRYAEKTAAFLHL
LFPFYGSSLKIARTSFRPVEISGRATSARKDDTRLHVDAFPSSPTGGERI
LRVFSNINPQGKPRSWRIGEPFQNYLNHLLPQLSPPAPGKRFLLYLFGIT
KGYRSLYDHYMLELHDKGKLDLEYQKNSPQVAFDFPAGSTWIVFTDQVLH
AVDKGQFLLEQTFHLKVNALKHPEKSPLKLLETALNKKLVSSESFKL
3D structure
PDB5yka Biochemical and Structural Insights into an Fe(II)/ alpha-Ketoglutarate/O2-Dependent Dioxygenase, Kdo 3-Hydroxylase (KdoO).
ChainA
Resolution1.448 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CO A H146 D148 H260 H136 D138 H250
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5yka, PDBe:5yka, PDBj:5yka
PDBsum5yka
PubMed30092253
UniProtB3DUR4

[Back to BioLiP]