Structure of PDB 5yd4 Chain A

Receptor sequence
>5yd4A (length=232) Species: 10090 (Mus musculus) [Search protein sequence]
EVQLQQSGAELVRPGTSVKMSCKAAGYTFTKYWIGWVKQRPGHGLEWIGD
IHPGSFYSNYNEKFKGKATLTADTSSSTAYMQLSSLTSEDSAIYYCARDY
YTNYGDWGQGTSVTVSGGSDIVMTQAAPSVSVTPGESVSISCRSSKSLLH
RNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRIS
RVEAEDVGVYYCMQHLEYPYTFGSGTKLELKV
3D structure
PDB5yd4 Intramolecular H-bonds govern the recognition of a flexible peptide by an antibody
ChainA
Resolution1.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A K33 W35 D52 H54 S57 Y59 Y103 H171 Y177 H236 E238 Y239 Y241 K31 W33 D50 H52 S55 Y57 Y101 H150 Y156 H215 E217 Y218 Y220
Gene Ontology
Molecular Function
GO:0003823 antigen binding
Biological Process
GO:0002250 adaptive immune response
GO:0006955 immune response
Cellular Component
GO:0005615 extracellular space
GO:0019814 immunoglobulin complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5yd4, PDBe:5yd4, PDBj:5yd4
PDBsum5yd4
PubMed29924367
UniProtP01630|KV2A6_MOUSE Ig kappa chain V-II region 7S34.1

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