Structure of PDB 5ya8 Chain A

Receptor sequence
>5ya8A (length=366) Species: 1197861 (Paracoccus laeviglucosivorans) [Search protein sequence]
ALGVALIGTGFMGKCHAMAWRNVATAFGGLPPRLEVLADMPADKAHSLAS
SFGFARGTADWREAVSDPAVDVVSITTPNGLHREMAEAALAAGKHVWLEK
PMALSVEDAQAMEAAARASDRRTIIGYNYTRSPAFRAAVDLIAEGAIGRP
IHFRGMYDEDYMADPDLPWSWRLTRKDGGLGALGDLGCHLVSVMVSLMGP
VARVYAQADTVITDRPHQGGTARVENEDQAQALIRFASGTSGEFSCSRVA
RGYRCRLAWEVQGTEGTLRFDQERMNELWLYQPGRPEIDGFRRILTGPAQ
PGFAAFCPGGGHNFGFNEQKVVEAEMLRQAIAGRGKAWPDFTDGLTIERV
IHGMATSAQTGQPVNF
3D structure
PDB5ya8 Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
ChainA
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD A T15 G16 F17 M18 D45 M46 T82 T83 P84 N85 H88 E105 K106 N134 H195 T9 G10 F11 M12 D39 M40 T76 T77 P78 N79 H82 E99 K100 N128 H189
BS02 INS A K106 Y135 Y163 E165 R178 D191 H195 K100 Y129 Y157 E159 R172 D185 H189
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5ya8, PDBe:5ya8, PDBj:5ya8
PDBsum5ya8
PubMed29799855
UniProtK7ZP76

[Back to BioLiP]