Structure of PDB 5y6g Chain A

Receptor sequence
>5y6gA (length=131) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
QRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKPA
ELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSF
RFLNVSPTVERQLQRIIFSLEREAREKADKV
3D structure
PDB5y6g Structural insights into the mechanism of c-di-GMP-bound YcgR regulating flagellar motility inEscherichia coli.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C2E A R113 R114 R118 S192 R208 S210 R2 R3 R7 S81 R97 S99 PDBbind-CN: -logKd/Ki=7.00,Kd=99nM
BS02 C2E A R113 R114 R115 R118 D145 G149 G150 M151 G152 R208 S210 F211 R212 R2 R3 R4 R7 D34 G38 G39 M40 G41 R97 S99 F100 R101 PDBbind-CN: -logKd/Ki=7.00,Kd=99nM
Gene Ontology
Molecular Function
GO:0035438 cyclic-di-GMP binding

View graph for
Molecular Function
External links
PDB RCSB:5y6g, PDBe:5y6g, PDBj:5y6g
PDBsum5y6g
PubMed31836667
UniProtP76010|YCGR_ECOLI Flagellar brake protein YcgR (Gene Name=ycgR)

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