Structure of PDB 5xyi Chain A

Receptor sequence
>5xyiA (length=204) Species: 5722 (Trichomonas vaginalis) [Search protein sequence]
AVIKMMLAAKVYLGSTNLSFGMKPYVFTCRKDGTHVINLAMTYEKIKLAA
RMIYAVEEPKDVLASTKSFTRAVHKFAEFLGANYVEQRFTPGLFTNYSIK
NFCEPRLMIVCDPNTDSQAVHEAAYANIPCIALCDTDAHLDYVDCVIPCN
TKNKNSMGLVMWLLTREVLRLRGALTEWSVLPDLFFYRDAADEAKIAEAL
EAEG
3D structure
PDB5xyi Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
ChainA
Resolution3.35 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A F30 K41 R100 P103 G104 T107 N108 Q130 H133 E134 Y137 H151 D153 F20 K31 R88 P91 G92 T95 N96 Q118 H121 E122 Y125 H139 D141
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5xyi, PDBe:5xyi, PDBj:5xyi
PDBsum5xyi
PubMed28809395
UniProtA2EFE7

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