Structure of PDB 5xut Chain A

Receptor sequence

>5xutA (length=1217) Species: 1410628 (Lachnospiraceae bacterium ND2006)

MSKLEKFTNCYSLSKTLRFKAIPVGKTQENIDNKRLLVEDEKRAEDYKGV
KKLLDRYYLSFINDVLHSIKLKNLNNYISLFRKKTRTEKENKELENLEIN
LRKEIAKAFKGNEGYKSLFKKDIIETILPEFLDDKDEIALVNSFNGFTTA
FTGFFDNRENMFSEEAKSTSIAFRCINENLTRYISNMDIFEKVDAIFDKH
EVQEIKEKILNSDYDVEDFFEGEFFNFVLTQEGIDVYNAIIGGFVTESGE
KIKGLNEYINLYNQKTKQKLPKFKPLYKQVLSDRESLSFYGEGYTSDEEV
LEVFRNTLNKNSEIFSSIKKLEKLFKNFDEYSSAGIFVKNGPAISTISKD
IFGEWNVIRDKWNAEYDDIHLVTEKYEDDRRKSFKKIGSFSLEQLQEYAD
ADLSVVEKLKEIIIQKVDEIYKVYGSSEKLFDADFVLEKSLKKNDAVVAI
MKDLLDSVKSFENYIKAFFGEGKETNRDESFYGDFVLAYDILLKVDHIYD
AIRNYVTQKPYSKDKFKLYFQNPQFMGGWDKDKETDYRATILRYGSKYYL
AIMDKKYAKCLQKIDKDDVNGNYEKINYKLLPGPNKMLPKVFFSKKWMAY
YNPSEDIQKIYKNGTFKKGDMFNLNDCHKLIDFFKDSISRYPKWSNAYDF
NFSETEKYKDIAGFYREVEEQGYKVSFESASKKEVDKLVEEGKLYMFQIY
NKDFSDKSHGTPNLHTMYFKLLFDENNHGQIRLSGGAELFMRRASLKKEE
LVVHPANSPIANKNPDNPKKTTTLSYDVYKDKRFSEDQYELHIPIAINKC
PKNIFKINTEVRVLLKHDDNPYVIGIDRGERNLLYIVVVDGKGNIVEQYS
LNEIINNFNGIRIKTDYHSLLDKKEKERFEARQNWTSIENIKELKAGYIS
QVVHKICELVEKYDAVIALEDLNSGFKNSRVKVEKQVYQKFEKMLIDKLN
YMVDKKSNPCATGGALKGYQITNKFESFKSMSTQNGFIFYIPAWLTSKID
PSTGFVNLLKTKYTSIADSKKFISSFDRIMYVPEEDLFEFALDYKNFSRT
DADYIKKWKLYSYGNRIRIFRNNVFDWEEVCLTSAYKELFNKYGINYQQG
DIRALLCEQSDKAFYSSFMALMSLMLQMRNSITGRTDVDFLISPVKNSDG
IFYDSRNYEAQENAILPKNADANGAYNIARKVLWAIGQFKKAEDEKLDKV
KIAISNKEWLEYAQTSV

3D structure

• PDB: 5xut Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1.
• Chain: A
• Resolution: 2.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	A	S14 K15 T16 R18 F19 K20 K51 N157 R158 R174 K253 L261 Q264 K267 Y277 K278 V280 W355 K464 D505 R508 K520 N706 K707 S710 K712 H714 G715 T716 N718 H720 E743 R747 H759 I765 A766 N767 K768 N769 N772 K774 T777 L779 Y781 Y784 K785 D786 R788 Q793 H797 F863 I866 Y872 F884 R887 E898 G902 S905 H909 V936 K937 K953 K960	S14 K15 T16 R18 F19 K20 K51 N157 R158 R174 K253 L261 Q264 K267 Y277 K278 V280 W355 K459 D500 R503 K515 N701 K702 S705 K707 H709 G710 T711 N713 H715 E738 R742 H754 I760 A761 N762 K763 N764 N767 K769 T772 L774 Y776 Y779 K780 D781 R783 Q788 H792 F858 I861 Y867 F879 R882 E893 G897 S900 H904 V931 K932 K948 K955
BS02	dna	A	N160 K167 S168 G242 V245 K251 E257 N260 S286 S288 Y290 K349 W355 N509 T512 Q513 K514 D535 K538 Y542 L585 P587 K595 S599 K601 Y646 K648 W649 S739 G740 N895 I896 K897 Q944 K945 S982 F983 K984	N160 K167 S168 G242 V245 K251 E257 N260 S286 S288 Y290 K349 W355 N504 T507 Q508 K509 D530 K533 Y537 L580 P582 K590 S594 K596 Y641 K643 W644 S734 G735 N890 I891 K892 Q939 K940 S977 F978 K979
BS03	dna	A	K120 K121 G146 T148 T149 Q529 K591	K120 K121 G146 T148 T149 Q524 K586

Gene Ontology

Molecular Function

• GO:0046872 metal ion binding

External links

• PDB: RCSB:5xut, PDBe:5xut, PDBj:5xut
• PDBsum: 5xut
• PubMed: 28781234
• UniProt: A0A182DWE3