Structure of PDB 5xj2 Chain A

Receptor sequence
>5xj2A (length=454) Species: 170187 (Streptococcus pneumoniae TIGR4) [Search protein sequence]
MLKKNDIVEVEIVDLTHEGAGVAKVDGLVFFVENALPSEKILMRVLKVNK
KIGFGKVEKYLVQSPHRNQDLDLAYLRSGIADLGHLSYPEQLKFKTKQVK
DSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFRKNS
HNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVR
RGHYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNA
IFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFA
ELKKDDVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNK
ITNAHYVCDTAENAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGA
DRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVQTVALLSK
LDVD
3D structure
PDB5xj2 Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD
ChainA
Resolution2.84 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A T16 H17 E18 F54 R384 R415 T16 H17 E18 F54 R384 R415
BS02 SAH A F281 Y293 Y312 S313 T317 E333 L334 D359 T360 A361 D381 F281 Y293 Y312 S313 T317 E333 L334 D359 T360 A361 D381
Gene Ontology
Molecular Function
GO:0008173 RNA methyltransferase activity
Biological Process
GO:0006396 RNA processing

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Molecular Function
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Biological Process
External links
PDB RCSB:5xj2, PDBe:5xj2, PDBj:5xj2
PDBsum5xj2
PubMed28949991
UniProtQ97R12|Y1029_STRPN Uncharacterized RNA methyltransferase SP_1029 (Gene Name=SP_1029)

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