Structure of PDB 5xc5 Chain A

Receptor sequence
>5xc5A (length=167) Species: 212035 (Acanthamoeba polyphaga mimivirus) [Search protein sequence]
GYKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKT
LKLNIWDTAGLERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDL
RINCHTTYYILVVANKIDIDKNNWRVSENEIKKFCRDNDCDYVFASSFES
DTVNNLFGKMIDKMSEI
3D structure
PDB5xc5 Crystal structures of two forms of the Acanthamoeba polyphaga mimivirus Rab GTPase
ChainA
Resolution1.398 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) L65
Catalytic site (residue number reindexed from 1) L61
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GTP A S14 G15 V16 G17 K18 S19 S20 V34 T37 G64 K120 D122 S150 S151 F152 S10 G11 V12 G13 K14 S15 S16 V30 T33 G60 K116 D118 S146 S147 F148
BS02 MG A S19 T37 S15 T33
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:5xc5, PDBe:5xc5, PDBj:5xc5
PDBsum5xc5
PubMed28779233
UniProtQ5UQ27|RABL_MIMIV Probable Rab-related GTPase (Gene Name=MIMI_R214)

[Back to BioLiP]