Structure of PDB 5wzp Chain A

Receptor sequence
>5wzpA (length=603) Species: 1681 (Bifidobacterium bifidum) [Search protein sequence]
MMQFTMSGTMLRFDETTLRFSFSRDGATWSGCDGIEPQLTRESFSFAGAA
TVTHERIETGTGVGVRSVFAGFADYAFETYIWIERSSGDVLCEWVPLRID
RVLWPAPLSFDRADAHDVTLITHEQGVMIPNSWPTEVGTDAVSFGGRFET
AGGYMPWFAQLRSDGHAYIAICETPWNAGYDIDHPAGGPYTHVGMWFEPS
LGRMDYRRVVRYRLLDHADHTAICKTYRAYVNERGRLRTLAEKAARNPSV
RDLLGRSWVHVGIKTNVQPDSSFYDPAQPGKNDSLVTFAQRERQMRTLHE
MGAGRLYLHLDGWAQPGYDNGHPDYLPACREAGGWKGMKSLIDACHEQGD
LFGTHDQYRDYYFAARTFDPRNAIRLADGTMPEHAMWAGGRQTYLCAELA
PDYVRRNFSEIATHGIVLDCAYLDVFTCNEGDECSHPEHRMTRRECYERR
AECFEYLLAHGILTSSEEVSDWAVPSLVFCHYAPYDFQMRSPDAPRHGIP
VPLYNLVYHDCVIQPWMMDRVAGGDDYMLYALLNGGAPYLIRDAAYTEND
IERCAVVAGLHRRVGMQELVRHDLVGGDPLVQRSVFADGTAVTCDFHAQT
YEV
3D structure
PDB5wzp The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
ChainA
Resolution2.64 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C407 C445 H450 C396 C434 H439
BS02 CA A H271 H320 D322 H366 H260 H309 D311 H355
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0033926 endo-alpha-N-acetylgalactosaminidase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5wzp, PDBe:5wzp, PDBj:5wzp
PDBsum5wzp
PubMed28546425
UniProtG5ELM1

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