Structure of PDB 5vyw Chain A

Receptor sequence
>5vywA (length=981) Species: 1358 (Lactococcus lactis) [Search protein sequence]
MKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLI
GQGKKPIDAYLDIDDIIRVALESGADAIHPGYGLLSENLEFATKVRAAGL
VFVGPELHHLDIFGDKIKAKAAADEAKVPGIENPKHIEVQILGDRHGNII
HLHERDCSVQRRNQKVIEIAPAVGLSPDFRNEICEAAVKLCKNVGYVNAG
TVEFLVKDDKFYFIEVNPRVQVEHTITELITGVDIVQAQILIAQGKDLHR
EIGLPAQSEIPLLGSAIQCRITTEDPQNGFLPDTGKIDTYRSPGGFGIRL
DVGNAYAGYEVTPYFDSLLVKVCTFANEFSDSVRKMDRVLHEFRIRGVKT
NIPFLINVIANENFTSGQATTTFIDNTPSLFNFPRLRDRGTKTLHYLSMI
TVNGFPGIENTEKRHFEEPRQPLLNLEKKKTAKNILDEQGADAVVDYVKN
TKEVLLTDTTLRDAHQSLLATRLRLQDMKGIAQAIDQGLPELFSAEMWGG
ATFDVAYRFLNESPWYRLRKLRKLMPNTMFQMLFRGSNAVGYQNYPDNVI
EEFIRVAAHEGIDVFRIFDSLNWLPQMEKSIQAVRDNGKIAEATICYTGD
ILDPSRPKYNIQYYKDLAKELEATGAHILAVKDMAGLLKPQAAYRLISEL
KDTVDLPIHLHTHDTSGNGIITYSGATQAGVDIIDVATASLAGGTSQPSM
QSIYYALEHGPRHASINVKNAEQIDHYWEDVRKYYAPFEAGITSPQTEVY
MHEMPGGQYTNLKSQAAAVGLGHRFDEIKQMYRKVNMMFGDIIKVTPSSK
VVGDMALFMIQNDLTEEDVYARGNELNFPESVVSFFRGDLGQPVGGFPEK
LQKIIVKDKAVITDRPGLHAEKVDFETVKADLEQKIGYEPGDHEVISYIM
YPQVFLDYQKMQREFGAVTLLDTPTFLHGMRLNEKIEVQIEKGKTLSIRL
DEIGEPDLAGNRVLFFNLNGQRREVVINDQS
3D structure
PDB5vyw Structural and functional studies of pyruvate carboxylase regulation by cyclic di-AMP in lactic acid bacteria.
ChainA
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A D534 K703 H732 H734 D463 K632 H661 H663
BS02 BTN A M470 G475 P477 M982 M399 G404 P406 M911
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 15:07:55 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5vyw', asym_id = 'A', title = 'Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5vyw', asym_id='A', title='Structural and functional studies of pyruvate ca...ulation by cyclic di-AMP in lactic acid bacteria.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0004736,0005524,0006090,0006094,0046872', uniprot = '', pdbid = '5vyw', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004736,0005524,0006090,0006094,0046872', uniprot='', pdbid='5vyw', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>