Structure of PDB 5vya Chain A

Receptor sequence

>5vyaA (length=579) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]

EYLSKYAIDMTEQARQGKLDPVIGREEEIRSTIRVLARRIKSNPCLIGEP
GIGKTAIIEGVAQRIIDDDVPTILQGAKLFSLDLAALTAGAKYKGDFEER
FKGVLKEIEESKTLIVLFIDEIHMLMGNGKDDAANILKPALSRGQLKVIG
ATTNNEYRSIVEKDGAFERRFQKIEVAEPSVRQTVAILRGLQPKYEIHHG
VRILDSALVTAAQLAKRYLPYRRLPDSALDLVDISCAGVAVARDSKQNVV
DSDTISETAARLTGIPVKKLSESENEKLIHMERDLSSEVVGQMDAIKAVS
NAVRLSRSGLANPRQPASFLFLGLSGSGKTELAKKVAGFLFNDEDMMIRV
DCSELSEKYAVSKLLGTTAGYVGYDEGGFLTNQLQYKPYSVLLFDEVEKA
HPDVLTVMLQMLDDGRITSGQGKTIDCSNCIVIMTSNLGAEFINSQQGSK
IQESTKNLVMGAVRQHFRPEFLNRISSIVIFNKLSRKAIHKIVDIRLKEI
EERFEQNDKHYKLNLTQEAKDFLAKYGYSDDMGARPLNRLIQNEILNKLA
LRILKNEIKDKETVNVVLEECLEVLPNHE

3D structure

PDB

5vya Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104.

Chain

Resolution

4.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	peptide	A	Y257 K258 Y650 G661 Y662 V663	Y93 K94 Y359 G370 Y371 V372
BS02	AGS	A	D184 P185 G215 I216 G217 K218 T219 A220 I351 L393	D20 P21 G51 I52 G53 K54 T55 A56 I187 L229
BS03	AGS	A	E579 V580 G617 S618 G619 K620 T621 E622 R787 A825	E288 V289 G326 S327 G328 K329 T330 E331 R496 A534
BS04	AGS	A	R333 R334	R169 R170

Gene Ontology

	Molecular Function
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0016887	ATP hydrolysis activity
GO:0042802	identical protein binding
GO:0043531	ADP binding
GO:0051082	unfolded protein binding
GO:0051087	protein-folding chaperone binding

	Biological Process
GO:0006620	post-translational protein targeting to endoplasmic reticulum membrane
GO:0034605	cellular response to heat
GO:0034975	protein folding in endoplasmic reticulum
GO:0035617	stress granule disassembly
GO:0042026	protein refolding
GO:0043335	protein unfolding
GO:0051085	chaperone cofactor-dependent protein refolding
GO:0070370	cellular heat acclimation
GO:0070414	trehalose metabolism in response to heat stress

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0034399	nuclear periphery
GO:0072380	TRC complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5vya, PDBe:5vya, PDBj:5vya
PDBsum	5vya
PubMed	28619716
UniProt	P31539\|HS104_YEAST Heat shock protein 104 (Gene Name=HSP104)

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